6WKO
Structure of an influenza C virus hemagglutinin-esterase-fusion (HEF2) intermediate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-09 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9397 |
Spacegroup name | P 21 3 |
Unit cell lengths | 65.142, 65.142, 65.142 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.062 - 2.401 |
R-factor | 0.2002 |
Rwork | 0.197 |
R-free | 0.25460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4NKJ chain A |
RMSD bond length | 0.010 |
RMSD bond angle | 0.972 |
Data reduction software | DIALS (1.12.0) |
Data scaling software | Aimless (0.6.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1-2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.140 | 65.140 | 2.490 |
High resolution limit [Å] | 2.400 | 8.980 | 2.400 |
Rmerge | 0.117 | 0.043 | 1.896 |
Rmeas | 0.120 | 0.044 | 1.941 |
Rpim | 0.026 | 0.010 | 0.414 |
Number of reflections | 3791 | 91 | 391 |
<I/σ(I)> | 13.3 | ||
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 20.6 | 16.5 | 21.6 |
CC(1/2) | 1.000 | 1.000 | 0.762 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.1 | 293 | 85 mM tri-sodium citrate pH 5.6, 29.75% (v/v) tert-butanol and 15% (v/v) glycerol |