6WGQ
The crystal structure of a beta-lactamase from Shigella flexneri 2a str. 2457T
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-03 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.419, 73.767, 109.512 |
Unit cell angles | 90.00, 92.40, 90.00 |
Refinement procedure
Resolution | 46.380 - 1.800 |
R-factor | 0.1546 |
Rwork | 0.153 |
R-free | 0.19160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6dpz |
RMSD bond length | 0.007 |
RMSD bond angle | 0.856 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.400 | 1.830 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.116 | 0.559 |
Rmeas | 0.134 | 0.680 |
Rpim | 0.067 | 0.377 |
Number of reflections | 66678 | 2899 |
<I/σ(I)> | 19.1 | 2.4 |
Completeness [%] | 98.2 | 86.5 |
Redundancy | 3.8 | 2.8 |
CC(1/2) | 0.988 | 0.661 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | 0.1M HEPES:NaOH 30% (w/v) PEG 1000 |