6WFI
Methylmalonyl-CoA epimerase in complex with 2-nitronate-propionyl-CoA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2017-02-08 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97872 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 68.837, 68.837, 103.370 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.860 - 1.370 |
R-factor | 0.1486 |
Rwork | 0.147 |
R-free | 0.17360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jc5 |
RMSD bond length | 0.021 |
RMSD bond angle | 2.617 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.420 |
High resolution limit [Å] | 1.370 | 1.370 |
Rmerge | 0.059 | 0.470 |
Rmeas | 0.061 | |
Rpim | 0.016 | |
Total number of observations | 752533 | |
Number of reflections | 52867 | 5196 |
<I/σ(I)> | 14.2 | 6.516 |
Completeness [%] | 99.8 | 100 |
Redundancy | 14.2 | 13.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | 50 mM sodium chloride, 100 mM Bis-Tris:HCl pH 7.0, 2.6 M ammonium sulfate, 5% PEG 400 |