6WE1
Wheat dwarf virus Rep domain complexed with a single-stranded DNA 8-mer comprising the cleavage site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 298 |
Detector technology | CCD |
Collection date | 2019-10-29 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.542 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 50.626, 50.626, 241.977 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.550 - 2.612 |
R-factor | 0.1907 |
Rwork | 0.188 |
R-free | 0.24350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6q1m |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.550 | 2.705 |
High resolution limit [Å] | 2.612 | 2.612 |
Rmeas | 0.112 | 0.609 |
Rpim | 0.071 | 0.378 |
Number of reflections | 9674 | 876 |
<I/σ(I)> | 7.7 | 2.27 |
Completeness [%] | 93.3 | 87.6 |
Redundancy | 1.6 | |
CC(1/2) | 0.987 | 0.702 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 12% w/v PEG 8000, 0.1 M sodium cocadylate, pH 6.5, 0.2M zinc acetate, 25% glycerol |