6W2H
Crystal Structure of the Internal UBA Domain of HHR23A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-01-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1 |
Spacegroup name | P 43 |
Unit cell lengths | 31.119, 31.119, 40.488 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.120 - 1.600 |
R-factor | 0.1662 |
Rwork | 0.162 |
R-free | 0.20540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | P43 UBA-1 Y188G Structure Solved by Sulfur SAD |
RMSD bond length | 0.005 |
RMSD bond angle | 0.705 |
Data reduction software | XDS (Mar 15, 2019) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (1.17.1-3660) |
Refinement software | PHENIX (1.17.1-3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.120 | 1.657 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.088 | 0.806 |
Rmeas | 0.091 | 0.840 |
Rpim | 0.025 | 0.234 |
Number of reflections | 5180 | 534 |
<I/σ(I)> | 21.45 | 3.35 |
Completeness [%] | 99.7 | 100 |
Redundancy | 13.2 | 12.6 |
CC(1/2) | 1.000 | 0.926 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1M Tris pH 8.5, 1.5 M Ammonium sulfate, 12%(v/v) Glycerol |