6W03
Crystal Structure of HIV-1 BG505 DS-SOSIP.3mut Prefusion Env Trimer in Complex with Human Antibodies 3H109L and 35O22 at 3.3 Angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-08-04 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 63 |
Unit cell lengths | 131.390, 131.390, 315.340 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.800 - 2.400 |
R-factor | 0.2325 |
Rwork | 0.230 |
R-free | 0.27270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6mtj |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.490 |
High resolution limit [Å] | 2.370 | 5.170 | 2.400 |
Rmerge | 0.149 | 0.093 | 0.426 |
Rmeas | 0.174 | 0.110 | 0.542 |
Rpim | 0.087 | 0.057 | 0.331 |
Number of reflections | 50660 | 11780 | 269 |
<I/σ(I)> | 5.8 | ||
Completeness [%] | 42.3 | 97.5 | 2.3 |
Redundancy | 3.3 | 4.1 | 1.1 |
CC(1/2) | 0.992 | 0.859 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 298 | 75 mM imidazole pH6.5, 150 mM LiSO4, 3.8% PEG MPD and 6.2% PEG 3,350 |