6VYC
Crystal structure of WD-repeat domain of human WDR91
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-02-10 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 77.004, 84.047, 110.165 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.070 - 2.100 |
R-factor | 0.2227 |
Rwork | 0.221 |
R-free | 0.25120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ow8 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.348 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.111 | 46.070 | 2.160 |
High resolution limit [Å] | 2.100 | 8.910 | 2.100 |
Rmerge | 0.091 | 0.027 | 0.906 |
Rmeas | 0.098 | 0.030 | 0.966 |
Rpim | 0.034 | 0.011 | 0.331 |
Total number of observations | 4292 | 27080 | |
Number of reflections | 41340 | 646 | 3269 |
<I/σ(I)> | 16.8 | 51.7 | 2.8 |
Completeness [%] | 97.6 | 99.1 | 95.6 |
Redundancy | 8 | 6.6 | 8.3 |
CC(1/2) | 0.999 | 0.999 | 0.827 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 12% PEG20000, 0.1 M MES |