6VUV
Scabin (S117A) toxin from Streptomyces scabies
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-13 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 88.450, 60.850, 37.950 |
Unit cell angles | 90.00, 99.60, 90.00 |
Refinement procedure
Resolution | 43.606 - 1.550 |
R-factor | 0.1801 |
Rwork | 0.179 |
R-free | 0.21010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5daz |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.610 | 1.605 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.042 | 0.921 |
Rmeas | 0.048 | |
Rpim | 0.023 | 0.516 |
Number of reflections | 28826 | 2860 |
<I/σ(I)> | 17.72 | 1.64 |
Completeness [%] | 99.7 | 99.62 |
Redundancy | 4.2 | 4.1 |
CC(1/2) | 0.999 | 0.692 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 294 | 100 mM potassium chloride, 50 mM sodium cacodylate trihydrate, pH 6.0, 16% PEG1000, 0.5 mM spermine |