6VTV
Crystal structure of PuuD gamma-glutamyl-gamma-aminobutyrate hydrolase from E. coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-09-08 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.161, 72.177, 98.631 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.930 - 2.060 |
R-factor | 0.1761 |
Rwork | 0.173 |
R-free | 0.21820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3fij |
RMSD bond length | 0.003 |
RMSD bond angle | 0.538 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.15_3448) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 23.000 | 2.100 |
High resolution limit [Å] | 2.060 | 2.060 |
Rmerge | 0.086 | 0.533 |
Rpim | 0.037 | 0.261 |
Number of reflections | 30884 | 1474 |
<I/σ(I)> | 21.3 | 2.15 |
Completeness [%] | 98.6 | 95.5 |
Redundancy | 6.3 | 4.8 |
CC(1/2) | 0.832 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.2 M calcium chloride, 0.1 M Tris pH 8.5, 25% (w/v) PEG3350, 1 mM manganese chloride |