6VT4
Naegleria gruberi RNA ligase R149A mutant apo
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-25 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97921 |
Spacegroup name | P 32 |
Unit cell lengths | 55.244, 55.244, 98.932 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 27.150 - 2.160 |
R-factor | 0.1949 |
Rwork | 0.189 |
R-free | 0.25170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cot |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.190 |
High resolution limit [Å] | 2.150 | 5.820 | 2.150 |
Rmerge | 0.041 | 0.021 | 0.350 |
Rmeas | 0.053 | 0.027 | 0.463 |
Rpim | 0.034 | 0.017 | 0.301 |
Number of reflections | 32271 | 864 | 912 |
<I/σ(I)> | 15.7 | ||
Completeness [%] | 99.3 | 93.9 | 99.7 |
Redundancy | 2.4 | 2.3 | 2 |
CC(1/2) | 0.998 | 0.780 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | The NgrRnlR149A protein sample (8.2 mg/ml) was mixed with equal volume (1 ul) of 0.1 M HEPES pH 6.5, 30% PEG6000 |