6VT2
Sialic acid binding region of Streptococcus sanguinis SK1 adhesin bound to sTa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-05 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 82.213, 269.859, 47.511 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.660 - 1.520 |
R-factor | 0.1778 |
Rwork | 0.177 |
R-free | 0.19300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vs7 |
RMSD bond length | 0.022 |
RMSD bond angle | 1.635 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874+SVN) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.580 |
High resolution limit [Å] | 1.520 | 1.550 |
Number of reflections | 148960 | 9822 |
<I/σ(I)> | 26.6 | |
Completeness [%] | 93.1 | 61 |
Redundancy | 4.3 | 2.8 |
CC(1/2) | 0.723 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 298 | Protein concentration: 72 mg/mL, Protein buffer: 150 mM NaCl, 20 mM tris pH 7.6, Reservoir solution: 20% (w/v) PEG 3350, 0.2 M MgSO4, 0.01 M SrCl2. Crystals were soaked with 10 mM sTa and cryoprotected with 40% (1:1 ethylene glycol: glycerol) and 60% reservoir solution |