6VOX
Crystal structure of multi-copper oxidase from Pseudomonas Parafulva
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-06 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9202 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 170.350, 170.350, 131.000 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.000 - 3.800 |
R-factor | 0.25802 |
Rwork | 0.258 |
R-free | 0.27404 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vow |
RMSD bond length | 0.015 |
RMSD bond angle | 1.984 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.900 |
High resolution limit [Å] | 3.800 | 3.800 |
Rmerge | 0.290 | 2.578 |
Number of reflections | 10690 | 635 |
<I/σ(I)> | 8.38 | |
Completeness [%] | 92.3 | |
Redundancy | 29.33 | |
CC(1/2) | 0.997 | 0.258 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 288 | Crystallized in plastic sitting drop trays, 30 nl of protein (concentration 10 mg/mL) combined with 30 nl precipitant: 0.0425 M BICINE pH 9.0 0.0425 M Sodium chloride 8.5% v/v Polyethylene glycol monomethyl ether 550 7.5% v/v Glycerol Solution was equilibrated against a reservoir of 60% PEG 3350. |