6VHU
Klebsiella oxytoca NpsA N-terminal subdomain in space group P21
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03322 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.949, 59.114, 80.408 |
Unit cell angles | 90.00, 101.12, 90.00 |
Refinement procedure
Resolution | 70.600 - 1.600 |
R-factor | 0.1895 |
Rwork | 0.188 |
R-free | 0.21840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vht |
RMSD bond length | 0.013 |
RMSD bond angle | 0.931 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.15_3459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 70.600 | 1.630 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmeas | 0.132 | 1.944 |
Rpim | 0.051 | 0.805 |
Number of reflections | 84862 | 3365 |
<I/σ(I)> | 8.5 | 0.9 |
Completeness [%] | 96.5 | 77.5 |
Redundancy | 6.7 | 5.6 |
CC(1/2) | 0.995 | 0.381 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | well solution: 100 mM HEPES pH 7.5, 150 mM KBr, 30% w/v PEG3350 protein solution (15 mg/mL): 50 mM HEPES pH 8.0, 150 mM NaCl, 0.2 mM TCEP hanging drops: 1 uL protein solution, 1 uL well solution |