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6VHU

Klebsiella oxytoca NpsA N-terminal subdomain in space group P21

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-25
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.03322
Spacegroup nameP 1 21 1
Unit cell lengths71.949, 59.114, 80.408
Unit cell angles90.00, 101.12, 90.00
Refinement procedure
Resolution70.600 - 1.600
R-factor0.1895
Rwork0.188
R-free0.21840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6vht
RMSD bond length0.013
RMSD bond angle0.931
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwarePHENIX (1.15_3459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]70.6001.630
High resolution limit [Å]1.6001.600
Rmeas0.1321.944
Rpim0.0510.805
Number of reflections848623365
<I/σ(I)>8.50.9
Completeness [%]96.577.5
Redundancy6.75.6
CC(1/2)0.9950.381
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293well solution: 100 mM HEPES pH 7.5, 150 mM KBr, 30% w/v PEG3350 protein solution (15 mg/mL): 50 mM HEPES pH 8.0, 150 mM NaCl, 0.2 mM TCEP hanging drops: 1 uL protein solution, 1 uL well solution

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PDB entries from 2024-05-15

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