6VHT
Klebsiella oxytoca NpsA N-terminal subdomain in space group C2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03322 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 76.597, 60.088, 80.775 |
Unit cell angles | 90.00, 103.54, 90.00 |
Refinement procedure
Resolution | 46.760 - 1.840 |
R-factor | 0.21 |
Rwork | 0.208 |
R-free | 0.24830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vsq |
RMSD bond length | 0.012 |
RMSD bond angle | 1.210 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.15_3459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.760 | 1.870 |
High resolution limit [Å] | 1.840 | 1.840 |
Rmeas | 0.090 | 2.286 |
Rpim | 0.034 | 0.886 |
Number of reflections | 29872 | 1552 |
<I/σ(I)> | 10.2 | 0.9 |
Completeness [%] | 96.3 | 96.9 |
Redundancy | 6.8 | 6.5 |
CC(1/2) | 0.999 | 0.335 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | well solution: 100 mM HEPES pH 7.5, 150 mM KBr, 30% w/v PEG3350 protein solution (15 mg/mL): 50 mM HEPES pH 8.0, 150 mM NaCl, 0.2 mM TCEP hanging drops: 1 uL protein solution, 1 uL well solution |