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6VHT

Klebsiella oxytoca NpsA N-terminal subdomain in space group C2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-25
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.03322
Spacegroup nameC 1 2 1
Unit cell lengths76.597, 60.088, 80.775
Unit cell angles90.00, 103.54, 90.00
Refinement procedure
Resolution46.760 - 1.840
R-factor0.21
Rwork0.208
R-free0.24830
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2vsq
RMSD bond length0.012
RMSD bond angle1.210
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwarePHENIX (1.15_3459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.7601.870
High resolution limit [Å]1.8401.840
Rmeas0.0902.286
Rpim0.0340.886
Number of reflections298721552
<I/σ(I)>10.20.9
Completeness [%]96.396.9
Redundancy6.86.5
CC(1/2)0.9990.335
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293well solution: 100 mM HEPES pH 7.5, 150 mM KBr, 30% w/v PEG3350 protein solution (15 mg/mL): 50 mM HEPES pH 8.0, 150 mM NaCl, 0.2 mM TCEP hanging drops: 1 uL protein solution, 1 uL well solution

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PDB entries from 2024-05-15

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