6VHD
FphF, Staphylococcus aureus fluorophosphonate-binding serine hydrolases F, KT129 bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-31 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.954 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 87.202, 87.202, 455.197 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.280 - 1.980 |
R-factor | 0.178 |
Rwork | 0.176 |
R-free | 0.21310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vh9 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (dev-3699) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.280 | 49.280 | 2.020 |
High resolution limit [Å] | 1.980 | 9.700 | 1.980 |
Rmerge | 0.151 | 0.037 | 2.676 |
Rmeas | 0.154 | 0.038 | 2.730 |
Rpim | 0.029 | 0.008 | 0.535 |
Total number of observations | 16651 | 107296 | |
Number of reflections | 73040 | 809 | 4307 |
<I/σ(I)> | 16.7 | 63.1 | 1.5 |
Completeness [%] | 99.9 | 99.4 | 98.5 |
Redundancy | 27.1 | 20.6 | 24.9 |
CC(1/2) | 0.999 | 1.000 | 0.711 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289.15 | 0.2 uL ~7.5 mg/ml FphF+KT129 (0.12mM KT129, 12% DMSO, 18 mM HEPES pH 7.5, 8 mM NaCl) were mixed with 0.2 uL of reservoir solution. Sitting drop reservoir contained 50 uL of 0.2 M Sodium citrate, 0.1 M Bis-Tris propane pH 6.5, 20% w/v PEG 3350. Crystals were soaked for ~20 seconds in 75% reservoir solution and 25% glycerol prior to freezing in liquid nitrogen |