6VBM
Crystal structure of a S310A mutant of PBP2 from Neisseria gonorrhoeae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.594, 77.007, 87.889 |
Unit cell angles | 90.00, 92.34, 90.00 |
Refinement procedure
Resolution | 39.100 - 1.710 |
R-factor | 0.19509 |
Rwork | 0.194 |
R-free | 0.22170 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6p53 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.281 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | FFT |
Refinement software | REFMAC (5.8.0218) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.100 | 1.750 |
High resolution limit [Å] | 1.710 | 1.710 |
Rmerge | 0.069 | 0.400 |
Rpim | 0.034 | 0.206 |
Number of reflections | 63070 | 2904 |
<I/σ(I)> | 45.9 | 3 |
Completeness [%] | 98.6 | 92.6 |
Redundancy | 5.1 | |
CC(1/2) | 0.990 | 0.904 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.3 | 291 | 0.1 M CHES, 40% PEG 600 |