6VB8
Crystal structure of a lectin from Canavalia brasiliensis seed (ConBr) complexed with indole-3-acetic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-18 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.458 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 67.806, 72.427, 99.272 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.690 - 2.200 |
R-factor | 0.2005 |
Rwork | 0.199 |
R-free | 0.23560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ju9 |
RMSD bond length | 0.004 |
RMSD bond angle | 1.274 |
Data reduction software | XDS (March 15, 2019) |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP (10.2.31) |
Refinement software | REFMAC (5.8.0241) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.690 | 2.320 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.046 | 0.212 |
Rmeas | 0.048 | 0.225 |
Rpim | 0.013 | 0.073 |
Number of reflections | 12527 | 1596 |
<I/σ(I)> | 30.4 | 8.9 |
Completeness [%] | 98.3 | 88.8 |
Redundancy | 11.9 | 8.9 |
CC(1/2) | 1.000 | 0.994 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 298 | 1.8 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M HEPES, pH 8.5 |