6V5K
Crystal structure of human DNA polymerase eta complexed with N7-nitrogen half-mustard guanine (NHMG) and dCTP*
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 120 |
Detector technology | PIXEL |
Collection date | 2018-10-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 61 |
Unit cell lengths | 98.911, 98.911, 82.138 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.460 - 2.690 |
Rwork | 0.188 |
R-free | 0.24240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4o3n |
RMSD bond length | 0.010 |
RMSD bond angle | 1.258 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.15rc3_3435) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.730 |
High resolution limit [Å] | 2.690 | 2.690 |
Rpim | 0.059 | 0.569 |
Number of reflections | 12870 | 651 |
<I/σ(I)> | 12.4 | 0.93 |
Completeness [%] | 99.5 | |
Redundancy | 10.3 | |
CC(1/2) | 0.469 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG2K-MME, MnCl2, MES, pH 6.0 |