6V4W
The crystal structure of a beta-lactamase from Chitinophaga pinensis DSM 2588
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-07 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 75.702, 76.313, 89.376 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.480 - 1.290 |
R-factor | 0.1619 |
Rwork | 0.161 |
R-free | 0.18630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5g58 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.847 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.300 |
High resolution limit [Å] | 1.280 | 1.280 |
Rmerge | 0.099 | 0.771 |
Rmeas | 0.121 | 0.961 |
Rpim | 0.067 | 0.563 |
Number of reflections | 127393 | 6253 |
<I/σ(I)> | 23.1 | 1.1 |
Completeness [%] | 97.7 | 97.2 |
Redundancy | 3 | 2.5 |
CC(1/2) | 0.457 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 296 | 0.2 M Magnesium Chloride, 0.1 M MES:NaOH, 25% (w/v) PEG 4000 |