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6V2N

Crystal structure of E. coli phosphoenolpyruvate carboxykinase mutant Lys254Ser

Replaces:  6CU4
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]105
Detector technologyCCD
Collection date2014-07-10
DetectorRAYONIX MX300HE
Wavelength(s)0.9793
Spacegroup nameP 1 21 1
Unit cell lengths54.906, 76.647, 65.421
Unit cell angles90.00, 96.38, 90.00
Refinement procedure
Resolution44.290 - 1.650
R-factor0.1465
Rwork0.146
R-free0.17430
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1oen
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.4501.709
High resolution limit [Å]1.6501.650
Rmerge0.0760.319
Rmeas0.0840.356
Rpim0.0360.158
Number of reflections647336479
<I/σ(I)>14.674.56
Completeness [%]99.899.92
Redundancy5.14.9
CC(1/2)0.9970.953
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH2932 ul drop containing 2 mg/ml Lys254Ser E. coli PCK, 5 mM MnCl2, 5mM MgCl2, 2mM ATP, 2mM pyruvate, 1 mM EDTA, 200 mM ammonium acetate, 100 mM sodium acetate pH 4.8, 0.01 mM DTT and 10% PEG 4000, was added to 2 ul drop containing 0.2 M calcium chloride and 20% PEG. Rod like crystals formed after 7 days, were harvested, and soaked in cryoprotectant solution (30% glycerol, 1mM EDTA, 100 mM sodium acetate, 200 mM ammonium acetate and 12% PEG 4000) for 10 seconds and flash cooled in liquid nitrogen

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PDB entries from 2024-05-15

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