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6V2L

E. coli Phosphoenolpyruvate carboxykinase S250A

Replaces:  6D5I
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08B1-1
Synchrotron siteCLSI
Beamline08B1-1
Temperature [K]105
Detector technologyCCD
Collection date2014-10-09
DetectorRAYONIX MX300HE
Wavelength(s)0.8856
Spacegroup nameC 1 2 1
Unit cell lengths124.910, 94.620, 46.350
Unit cell angles90.00, 96.21, 90.00
Refinement procedure
Resolution40.500 - 1.700
R-factor0.1691
Rwork0.167
R-free0.20830
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ayl
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.5001.761
High resolution limit [Å]1.7001.700
Rmerge0.1801.237
Rmeas0.209
Rpim0.1060.726
Number of reflections586035814
<I/σ(I)>9.631.25
Completeness [%]99.6
Redundancy3.8
CC(1/2)0.9920.491
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH293A 2ul drop with 3 mg/ml S250A PCK, 5 mM Manganese chloride, 5mM Magnesium chloride, 2 mM ATP, 2mM Pyruvate, 1 mM EDTA, 200 mM Ammonium acetate, 100 mM Sodium acetate pH 4.8, 0.01 mM DTT, 12% PEG 4000 was added to 2 ul drop containing 0.01 mM Nickel chloride, 0.1 M Tris pH 8.5, 20% PEG 2000. After a week a rod like crystal was removed and soaked in a solution with 30% glycerol 1mM EDTA, 100 mM sodium acetate 200mM ammonium acetate and 12% PEG 4000 for 10 seconds and flash cooled in liquid notrogen

219869

PDB entries from 2024-05-15

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