6V1L
Crystal structure of the first bromodomain (BD1) of human BRD4 bound to BI9564
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-04-04 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.940, 51.290, 52.510 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.770 - 2.100 |
R-factor | 0.1739 |
Rwork | 0.171 |
R-free | 0.22360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mxf |
RMSD bond length | 0.008 |
RMSD bond angle | 1.014 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1-2575_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.770 | 32.770 | 2.150 |
High resolution limit [Å] | 2.100 | 9.390 | 2.100 |
Rmerge | 0.139 | 0.029 | 0.518 |
Rmeas | 0.153 | 0.032 | 0.571 |
Total number of observations | 40278 | ||
Number of reflections | 6961 | 90 | 483 |
<I/σ(I)> | 19.7 | 42.6 | 8.12 |
Completeness [%] | 99.7 | 91.8 | 99.8 |
Redundancy | 5.786 | 4.367 | 5.801 |
CC(1/2) | 0.996 | 0.998 | 0.876 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M (NH4)2SO4, 0.1 M Tris (pH 8.5), and 25% PEG 3350 |