6V1D
Crystal structure of human trefoil factor 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9536 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.928, 41.905, 45.831 |
Unit cell angles | 90.00, 115.57, 90.00 |
Refinement procedure
Resolution | 41.344 - 2.400 |
R-factor | 0.1957 |
Rwork | 0.194 |
R-free | 0.22590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2psp |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.344 | 41.340 | 2.490 |
High resolution limit [Å] | 2.400 | 8.980 | 2.400 |
Rmerge | 0.266 | 0.099 | 0.983 |
Rmeas | 0.317 | 0.118 | 1.167 |
Rpim | 0.171 | 0.063 | 0.623 |
Total number of observations | 362 | 2067 | |
Number of reflections | 6054 | 126 | 611 |
<I/σ(I)> | 2.7 | 4.6 | 1 |
Completeness [%] | 98.6 | 98.2 | 97.3 |
Redundancy | 3.3 | 2.9 | 3.4 |
CC(1/2) | 0.958 | 0.991 | 0.570 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 1 M ammonium sulfate, 0.1 M Tris-HCl, pH 8.5 |