6UZI
Crystal structure of Dihydrolipoyl dehydrogenase from Elizabethkingia anophelis NUHP1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-07 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 74.060, 106.800, 255.700 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.250 - 2.800 |
R-factor | 0.1713 |
Rwork | 0.169 |
R-free | 0.22950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3urh as per Morda |
RMSD bond length | 0.004 |
RMSD bond angle | 0.722 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX (1.17.1 -3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.250 | 45.250 | 2.870 |
High resolution limit [Å] | 2.800 | 12.520 | 2.800 |
Rmerge | 0.088 | 0.028 | 0.630 |
Rmeas | 0.096 | 0.031 | 0.687 |
Total number of observations | 313757 | ||
Number of reflections | 50364 | 622 | 3695 |
<I/σ(I)> | 17 | 44.46 | 2.84 |
Completeness [%] | 98.9 | 93.1 | 99.8 |
Redundancy | 6.23 | 5.186 | 6.284 |
CC(1/2) | 0.998 | 0.998 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Rigaku Reagents JCSG+ screen, condition B2: 20% w/V PEG 3350, 200mM sodium thiocyanate: ElanA.01412.a.B1.PS38371 at 19.1 mg/ml. Cryo: 25% EG: tray 296479b2: puck CEB1-4. |