6UTT
LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase in complex with calcium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-21 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.979 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 107.661, 107.661, 320.418 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.490 - 2.490 |
R-factor | 0.2043 |
Rwork | 0.202 |
R-free | 0.25590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5udq |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.17.1-3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.150 | 48.150 | 2.550 |
High resolution limit [Å] | 2.490 | 11.670 | 2.490 |
Rmerge | 0.074 | 0.022 | 0.917 |
Rmeas | 0.079 | 0.024 | 0.976 |
Rpim | 0.027 | 0.009 | 0.328 |
Total number of observations | 4976 | 31312 | |
Number of reflections | 66185 | 737 | 3834 |
<I/σ(I)> | 18.2 | 50.1 | 2 |
Completeness [%] | 98.5 | 95.7 | 86.6 |
Redundancy | 8.4 | 6.8 | 8.2 |
CC(1/2) | 0.999 | 0.999 | 0.758 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294.15 | 5 uL ~25 mg/ml LarE (100 mM Tris-HCl pH 7.5, 300 mM NaCl) mixed with 5 uL of reservoir solution. Hanging drop reservoir contained 100 uL of 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 100 mM ammonium sulfate. Crystal soaked 60 minutes in 3.8 mM calcium chloride, 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 50 mM ammonium sulfate |