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6UTT

LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase in complex with calcium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2017-08-21
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.979
Spacegroup nameP 41 2 2
Unit cell lengths107.661, 107.661, 320.418
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.490 - 2.490
R-factor0.2043
Rwork0.202
R-free0.25590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5udq
Data reduction softwareXDS
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.17.1-3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.15048.1502.550
High resolution limit [Å]2.49011.6702.490
Rmerge0.0740.0220.917
Rmeas0.0790.0240.976
Rpim0.0270.0090.328
Total number of observations497631312
Number of reflections661857373834
<I/σ(I)>18.250.12
Completeness [%]98.595.786.6
Redundancy8.46.88.2
CC(1/2)0.9990.9990.758
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5294.155 uL ~25 mg/ml LarE (100 mM Tris-HCl pH 7.5, 300 mM NaCl) mixed with 5 uL of reservoir solution. Hanging drop reservoir contained 100 uL of 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 100 mM ammonium sulfate. Crystal soaked 60 minutes in 3.8 mM calcium chloride, 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 50 mM ammonium sulfate

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PDB entries from 2024-05-15

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