6UTR
LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase in complex with copper
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-08 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.127 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 108.978, 108.978, 323.690 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.350 - 2.410 |
R-factor | 0.2103 |
Rwork | 0.208 |
R-free | 0.25360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5udq |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.17-3644) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.740 | 48.740 | 2.460 |
High resolution limit [Å] | 2.410 | 12.070 | 2.410 |
Rmerge | 0.107 | 0.056 | 1.287 |
Rmeas | 0.111 | 0.058 | 1.332 |
Rpim | 0.028 | 0.015 | 0.339 |
Total number of observations | 9577 | 60947 | |
Number of reflections | 75724 | 736 | 4095 |
<I/σ(I)> | 15.6 | 35.6 | 1.9 |
Completeness [%] | 99.5 | 98.5 | 93.1 |
Redundancy | 15.4 | 13 | 14.9 |
CC(1/2) | 0.999 | 0.999 | 0.705 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294.15 | 5 uL ~25 mg/ml LarE (100 mM Tris-HCl pH 7.5, 300 mM NaCl) mixed with 5 uL of reservoir solution. Hanging drop reservoir contained 100 uL of 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 100 mM ammonium sulfate. Crystal soaked 60 minutes in 3.8 mM copper(II) sulfate, 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 50 mM ammonium sulfate |