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6UTR

LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase in complex with copper

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-08
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.127
Spacegroup nameP 41 2 2
Unit cell lengths108.978, 108.978, 323.690
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.350 - 2.410
R-factor0.2103
Rwork0.208
R-free0.25360
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5udq
Data reduction softwareXDS
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.17-3644)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.74048.7402.460
High resolution limit [Å]2.41012.0702.410
Rmerge0.1070.0561.287
Rmeas0.1110.0581.332
Rpim0.0280.0150.339
Total number of observations957760947
Number of reflections757247364095
<I/σ(I)>15.635.61.9
Completeness [%]99.598.593.1
Redundancy15.41314.9
CC(1/2)0.9990.9990.705
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5294.155 uL ~25 mg/ml LarE (100 mM Tris-HCl pH 7.5, 300 mM NaCl) mixed with 5 uL of reservoir solution. Hanging drop reservoir contained 100 uL of 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 100 mM ammonium sulfate. Crystal soaked 60 minutes in 3.8 mM copper(II) sulfate, 30% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 50 mM ammonium sulfate

219869

PDB entries from 2024-05-15

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