6UQ1
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-23 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9767 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 170.502, 223.508, 194.943 |
Unit cell angles | 90.00, 101.58, 90.00 |
Refinement procedure
Resolution | 49.521 - 3.600 |
R-factor | 0.2409 |
Rwork | 0.240 |
R-free | 0.28740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6blo |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.521 | 3.600 |
High resolution limit [Å] | 3.540 | 3.540 |
Rmerge | 0.491 | 3.695 |
Rmeas | 0.531 | 3.984 |
Rpim | 0.200 | 1.481 |
Total number of observations | 33112 | |
Number of reflections | 86875 | 4609 |
<I/σ(I)> | 5.1 | 0.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7 | 7.2 |
CC(1/2) | 0.979 | 0.251 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 390mM (NH4)2HPO4/NaH2PO4, pH 6.5, 5mM dioxane, 5mM DTT, 10-12% PEG6000 |