6UAL
A Self-Assembling DNA Crystal Scaffold with Cavities Containing 3 Helical Turns per Edge
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-15 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1 |
Spacegroup name | H 3 |
Unit cell lengths | 179.251, 179.251, 48.138 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.978 - 4.514 |
R-factor | 0.1993 |
Rwork | 0.197 |
R-free | 0.24270 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.679 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 4.580 |
High resolution limit [Å] | 4.514 | 12.160 | 4.514 |
Rmerge | 0.098 | 0.077 | 0.777 |
Rmeas | 0.104 | 0.082 | 0.833 |
Rpim | 0.034 | 0.027 | 0.294 |
Number of reflections | 3195 | 164 | 111 |
<I/σ(I)> | 10.5 | ||
Completeness [%] | 95.1 | 97 | 73 |
Redundancy | 8.7 | 9.8 | 7.1 |
CC(1/2) | 1.000 | 0.998 | 0.867 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.5 mL of 0.05 M cacodylate pH 7.0, 20 mM MgCl2, 1mM spermine, 1.0 mM cobalt hexamine, 15% ethanol was added to the reservoir with 2 uL added to the drop containing 4 uL of DNA stock. |