6U6O
Crystal structure of a vaccine-elicited anti-HIV-1 rhesus macaque antibody DH846
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-08-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.98 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.018, 36.991, 87.921 |
Unit cell angles | 90.00, 111.96, 90.00 |
Refinement procedure
Resolution | 43.844 - 2.806 |
R-factor | 0.2152 |
Rwork | 0.212 |
R-free | 0.27230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6u6m |
RMSD bond length | 0.003 |
RMSD bond angle | 0.693 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmeas | 0.757 | |
Rpim | 0.437 | |
Number of reflections | 9288 | 1097 |
<I/σ(I)> | 5.2 | 1.6 |
Completeness [%] | 85.2 | |
Redundancy | 2.7 | 2.6 |
CC(1/2) | 0.949 | 0.599 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 278 | 0.3M Magnesium chloride hexahydrate, 0.3M Calcium chloride dihydrate, 1.0M Imidazole; MES monohydrate (acid) pH6.5, 25% MPD, 25% PEG 1000, 25% PEG 3350 |