6U57
KDO8PS Structure Determined at the EuXFEL using Segmented Flow Injection
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | EUROPEAN XFEL BEAMLINE SPB/SFX |
Synchrotron site | European XFEL |
Beamline | SPB/SFX |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2017-09-20 |
Detector | AGIPD |
Wavelength(s) | 1.3316 |
Spacegroup name | I 2 3 |
Unit cell lengths | 118.000, 118.000, 118.000 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.000 - 2.800 |
R-factor | 0.1924 |
Rwork | 0.186 |
R-free | 0.24890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1x8f |
RMSD bond length | 0.006 |
RMSD bond angle | 1.471 |
Data reduction software | CrystFEL (0.8.0) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.000 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Number of reflections | 6888 | 674 |
<I/σ(I)> | 4.61 | 0.95 |
Completeness [%] | 100.0 | 100 |
Redundancy | 184.2 | 147.4 |
CC(1/2) | 0.637 | 0.417 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 7.3 | 293 | 8.75-12 mg/mL KDO8PS in 20 mM Tris-HCl pH=7.3, 125 mM KCl, 2 mM beta-mercaptoethanol with 16-20% w/v poly(ethylene glycol) methyl ether |