6TSX
Crystal structure of horse L ferritin (HoLf) Fe(III)-loaded for 30 minutes
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-26 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97950 |
Spacegroup name | F 4 3 2 |
Unit cell lengths | 181.242, 181.242, 181.242 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.706 - 2.021 |
Rwork | 0.184 |
R-free | 0.22110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lg2 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.907 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 104.640 | 2.420 | 2.130 |
High resolution limit [Å] | 2.020 | 2.300 | 2.020 |
Rmerge | 0.056 | 1.149 | 0.901 |
Rmeas | 0.060 | 1.243 | 0.941 |
Rpim | 0.013 | 0.354 | 0.199 |
Number of reflections | 17298 | 1670 | 2442 |
<I/σ(I)> | 30.4 | 2.1 | 3.9 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 21.7 | 12 | 22.2 |
CC(1/2) | 1.000 | 0.685 | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 30 mM cadmium nitrate, 1 M ammonium sulfate, 200 mM sodium acetate, pH 5.5 |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 30 mM cadmium nitrate, 1 M ammonium sulfate, 200 mM sodium acetate, pH 5.5 |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 30 mM cadmium nitrate, 1 M ammonium sulfate, 200 mM sodium acetate, pH 5.5 |