6TSA
Crystal structure of human L ferritin (HuLf) Fe(III)-loaded for 30 minutes
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-12 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.07227 |
Spacegroup name | I 4 3 2 |
Unit cell lengths | 152.690, 152.690, 152.690 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.280 - 2.180 |
Rwork | 0.202 |
R-free | 0.25750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lg8 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.796 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.280 | 3.230 | 2.300 |
High resolution limit [Å] | 2.180 | 3.060 | 2.180 |
Rmerge | 0.122 | 1.500 | 1.573 |
Rmeas | 0.128 | 1.565 | 1.641 |
Rpim | 0.028 | 0.354 | 0.347 |
Number of reflections | 16176 | 864 | 2300 |
<I/σ(I)> | 13.6 | 2.1 | 2.2 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 21.3 | 19.5 | 22.1 |
CC(1/2) | 0.999 | 0.837 | 0.839 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 293 | 80 mM cadmium nitrate, 80 mM ammonium sulfate, 200 mM sodium acetate, pH 4.6 |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 293 | 80 mM cadmium nitrate, 80 mM ammonium sulfate, 200 mM sodium acetate, pH 4.6 |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 293 | 80 mM cadmium nitrate, 80 mM ammonium sulfate, 200 mM sodium acetate, pH 4.6 |