6TJZ
Crystal structure of the SVS_A2 protein (W156Y mutant) from ancestral sequence reconstruction at 2.4 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.91841 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 74.882, 104.583, 109.240 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.000 - 2.400 |
R-factor | 0.1821 |
Rwork | 0.180 |
R-free | 0.22080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4okz |
RMSD bond length | 0.007 |
RMSD bond angle | 1.533 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.660 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.064 | 0.642 |
Rpim | 0.031 | 0.353 |
Number of reflections | 34301 | 3555 |
<I/σ(I)> | 10.8 | 1.9 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 5.6 | 5 |
CC(1/2) | 0.999 | 0.739 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.3 | 293 | 0.2M Na phosphate 0.1M Bis-Tris-Propane pH 6.3 18% PEG 3350 Cryoprotection: 0.2M Na phosphate 0.1M Bis-Tris-Propane pH 6.3 24% PEG 3350 5mM MgCl2 5 mM FPP |