6TJG
Crystal structure of the computationally designed Cake8 protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-26 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.368, 65.897, 71.027 |
Unit cell angles | 90.00, 92.64, 90.00 |
Refinement procedure
Resolution | 35.480 - 1.800 |
R-factor | 0.1786 |
Rwork | 0.176 |
R-free | 0.22460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Computationally designed model cake8 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.235 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.280 | 1.840 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.067 | 0.356 |
Rmeas | 0.076 | 0.400 |
Rpim | 0.034 | 0.180 |
Number of reflections | 29356 | 1704 |
<I/σ(I)> | 12.2 | 3.5 |
Completeness [%] | 99.8 | 99.9 |
Redundancy | 4.5 | 4.5 |
CC(1/2) | 0.998 | 0.972 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.18M Magnesium acetate, 0.09M Sodium, Cacodylate pH 6.5, 27% MPD, 15% Glycerol |