6TJC
Crystal structure of the computationally designed Cake3 protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-26 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 51.541, 64.313, 106.090 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.360 - 1.900 |
R-factor | 0.172 |
Rwork | 0.170 |
R-free | 0.20610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Computational design |
RMSD bond length | 0.008 |
RMSD bond angle | 0.954 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.360 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.055 | 0.387 |
Rmeas | 0.059 | 0.409 |
Rpim | 0.020 | 0.132 |
Number of reflections | 28542 | 1793 |
<I/σ(I)> | 21.8 | 5.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 8.6 | 5.6 |
CC(1/2) | 0.999 | 0.957 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.05M Potassium phosphate, 20% PEG8000 |