6TFI
PXR IN COMPLEX WITH THROMBIN INHIBITOR COMPOUND 17
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-10-13 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.91841 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.356, 88.964, 105.658 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.480 - 1.850 |
R-factor | 0.17276 |
Rwork | 0.172 |
R-free | 0.19932 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3hvl |
RMSD bond length | 0.005 |
RMSD bond angle | 1.308 |
Data reduction software | XDS (June 17, 2015) |
Data scaling software | XSCALE (June 17, 2015) |
Phasing software | REFMAC (5.5.0102) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.480 | 1.960 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmeas | 0.059 | 0.977 |
Number of reflections | 67925 | 10924 |
<I/σ(I)> | 17.15 | 1.82 |
Completeness [%] | 97.9 | 98.7 |
Redundancy | 5.07 | 5 |
CC(1/2) | 0.999 | 0.668 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 277 | 1 MICROLITER PROTEIN AT 12.1 MG/ML (IN 20 MILLIMOLAR TRIS PH 7.8, 250 MILLIMOLAR NACL, 2.5 MILLIMOLAR EDTA, 5% (V/V) GLYCEROL, 5 MM DTT), PREINCUBATED WITH 25 MILLIMOLAR COMPOUND 17 (FROM 500 MILLIMOLAR STOCK IN DMSO) for 24 hours at 277 K, MIXED WITH 1 MICROLITER OF RESERVOIR (100 MILLIMOLAR IMIDAZOLE PH 8.0, 20 % (V/V) MPD). CRYO BUFFER 100 MILLIMOLAR IMIDAZOLE PH 8.0, 30 % (V/V) MPD |