6TEC

Crystal Structure of full-length Human Lysyl Hydroxylase LH3 - Cocrystal with Fe2+, Mn2+, UDP-Xylose

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ESRF BEAMLINE ID23-2
Synchrotron site	ESRF
Beamline	ID23-2
Temperature [K]	100
Detector technology	PIXEL
Collection date	2018-10-22
Detector	DECTRIS PILATUS3 2M
Wavelength(s)	0.873
Spacegroup name	C 2 2 21
Unit cell lengths	97.264, 99.987, 223.960
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	48.790 - 2.400
R-factor	0.1867
Rwork	0.185
R-free	0.21590
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	6fxk
RMSD bond length	0.002
RMSD bond angle	0.515
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	PHENIX (1.16_3549)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	48.790	2.490
High resolution limit [Å]	2.400	2.400
Rmerge	0.209	1.831
Rpim	0.147	1.274
Number of reflections	43005	4500
<I/σ(I)>	5.5	5.7
Completeness [%]	99.9	99.9
Redundancy	5.5	5.7
CC(1/2)	0.992	0.586

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	7.8	277	600 mM sodium formate, 12% PGA-LM, 100 mM HEPES/NaOH, 500 uM FeCl2, 500 uM MnCl2, 1 mM UDP-Xylose