6TE1
Structure of the KDM1A/CoREST complex with the inhibitor 2-[3-{4-chloro-3-[(4-chlorophenyl)ethynyl]phenyl}-1-(3-morpholin-4-ylpropyl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl]-2-oxoethanol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-14 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.00001 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 120.310, 179.740, 236.770 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.050 - 3.110 |
R-factor | 0.1692 |
Rwork | 0.168 |
R-free | 0.19160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lhg |
RMSD bond length | 0.003 |
RMSD bond angle | 0.516 |
Data reduction software | xia2 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17_3644) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.230 | 3.190 |
High resolution limit [Å] | 3.110 | 3.110 |
Rmerge | 0.081 | 0.806 |
Rmeas | 0.096 | 0.976 |
Rpim | 0.040 | 0.394 |
Number of reflections | 46368 | 3413 |
<I/σ(I)> | 14.7 | 2.1 |
Completeness [%] | 99.8 | 99.9 |
Redundancy | 5.5 | 5.9 |
CC(1/2) | 0.999 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 1.1-1.2 M NA/K TARTRATE 0.1 M ADA |