6T8D
The cytotoxin MakB from Vibrio cholerae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-30 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.873 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.287, 54.230, 120.810 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.405 - 2.100 |
R-factor | 0.2177 |
Rwork | 0.215 |
R-free | 0.26120 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Phasing software | Auto-Rickshaw |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 120.810 | 120.810 | 2.160 |
High resolution limit [Å] | 2.100 | 8.910 | 2.100 |
Rmerge | 0.104 | 0.065 | 0.941 |
Rmeas | 0.113 | 0.072 | 1.024 |
Rpim | 0.045 | 0.031 | 0.399 |
Total number of observations | 1669 | 10975 | |
Number of reflections | 21126 | 322 | 1698 |
<I/σ(I)> | 9 | 21.9 | 1.9 |
Completeness [%] | 99.8 | 97.4 | 99.5 |
Redundancy | 6.5 | 5.2 | 6.5 |
CC(1/2) | 0.995 | 0.990 | 0.816 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 1.5 M MgSO4, 0.1 M MES pH 6.5 |