6T66
Crystal structure of the Vibrio cholerae replicative helicase (DnaB) with GDP-AlF4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-31 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9801 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 118.978, 123.292, 263.493 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.630 - 3.900 |
R-factor | 0.256 |
Rwork | 0.255 |
R-free | 0.27600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6qel |
RMSD bond length | 0.008 |
RMSD bond angle | 0.940 |
Data reduction software | XDS (Mar 15, 2019) |
Data scaling software | XDS (Mar 15, 2019) |
Phasing software | MOLREP (Vers 11.7.01) |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.630 | 49.620 | 4.070 |
High resolution limit [Å] | 3.900 | 17.650 | 3.900 |
Rmerge | 0.226 | 0.080 | 3.860 |
Rmeas | 0.293 | 0.083 | |
Rpim | 0.055 | 0.022 | 1.009 |
Number of reflections | 38678 | 440 | 2494 |
<I/σ(I)> | 6.2 | ||
Completeness [%] | 99.8 | 94.9 | 97.7 |
Redundancy | 18.3 | 15.7 | 15.5 |
CC(1/2) | 0.997 | 0.997 | 0.314 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 10% (v/v) MPD 0.1 M MES pH 6.0 |