6T3R
Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 24-ID-E |
| Synchrotron site | APS |
| Beamline | 24-ID-E |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2013-10-14 |
| Detector | ADSC QUANTUM 315 |
| Wavelength(s) | 0.9792 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 89.458, 95.100, 222.402 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 34.850 - 3.570 |
| R-factor | 0.2138 |
| Rwork | 0.212 |
| R-free | 0.25040 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3igi |
| Data reduction software | XDS (VERSION March 30, 2013) |
| Data scaling software | SCALA (3.3.20) |
| Phasing software | PHASER (2.5.5) |
| Refinement software | PHENIX (1.14-3260) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 44.480 | 44.480 | 3.760 |
| High resolution limit [Å] | 3.567 | 11.280 | 3.570 |
| Rmerge | 0.044 | 0.798 | |
| Rmeas | 0.157 | 0.054 | 0.921 |
| Rpim | 0.068 | 0.026 | 0.385 |
| Total number of observations | 108124 | 2777 | 16024 |
| Number of reflections | 22945 | 691 | 3305 |
| <I/σ(I)> | 9.4 | 23.6 | 2.5 |
| Completeness [%] | 98.7 | 84.8 | 99.3 |
| Redundancy | 4.7 | 4 | 4.8 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7 | 303 | 50 mM Na-HEPES pH 7.0, 100 mM magnesium acetate, 150 mM potassium chloride, 10 mM lithium chloride, 4% PEG 8000 |






