6T3R
Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-10-14 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.458, 95.100, 222.402 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.850 - 3.570 |
R-factor | 0.2138 |
Rwork | 0.212 |
R-free | 0.25040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3igi |
Data reduction software | XDS (VERSION March 30, 2013) |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER (2.5.5) |
Refinement software | PHENIX (1.14-3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.480 | 44.480 | 3.760 |
High resolution limit [Å] | 3.567 | 11.280 | 3.570 |
Rmerge | 0.044 | 0.798 | |
Rmeas | 0.157 | 0.054 | 0.921 |
Rpim | 0.068 | 0.026 | 0.385 |
Total number of observations | 108124 | 2777 | 16024 |
Number of reflections | 22945 | 691 | 3305 |
<I/σ(I)> | 9.4 | 23.6 | 2.5 |
Completeness [%] | 98.7 | 84.8 | 99.3 |
Redundancy | 4.7 | 4 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 303 | 50 mM Na-HEPES pH 7.0, 100 mM magnesium acetate, 150 mM potassium chloride, 10 mM lithium chloride, 4% PEG 8000 |