6T3L
PAS-GAF fragment from Deinococcus radiodurans phytochrome in dark state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | SACLA BEAMLINE BL3 |
Synchrotron site | SACLA |
Beamline | BL3 |
Temperature [K] | 298 |
Detector technology | CCD |
Collection date | 2018-10-12 |
Detector | MPCCD |
Wavelength(s) | 1.7712 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.980, 116.690, 117.860 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.820 - 2.070 |
R-factor | 0.1627 |
Rwork | 0.161 |
R-free | 0.19220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k5b |
RMSD bond length | 0.007 |
RMSD bond angle | 1.252 |
Data reduction software | CrystFEL |
Data scaling software | CrystFEL (0.6.3) |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.870 | 2.100 |
High resolution limit [Å] | 2.070 | 2.070 |
Number of reflections | 52060 | 2052 |
<I/σ(I)> | 9.21 | 0.83 |
Completeness [%] | 100.0 | 100 |
Redundancy | 461.35 | 65.9 |
CC(1/2) | 0.990 | 0.330 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 4.95 | 298 | 60 mM Sodium Acetate, 3.3% PEG400, 1 mM DTT, 30% 2-methyl-2,4-pentanediol |