6T1O
Crystal structure of MLLT1 (ENL) YEATS domain in complexed with benzimidazole-amide derivative 6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 49.027, 49.027, 131.431 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.940 - 1.900 |
R-factor | 0.2048 |
Rwork | 0.202 |
R-free | 0.25070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hq0 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.287 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.030 | 49.030 | 1.970 |
High resolution limit [Å] | 1.900 | 7.360 | 1.900 |
Rmerge | 0.077 | 0.051 | 0.418 |
Rmeas | 0.090 | 0.055 | 0.459 |
Rpim | 0.038 | 0.022 | 0.217 |
Number of reflections | 13008 | 298 | 1212 |
<I/σ(I)> | 8.7 | 2.6 | |
Completeness [%] | 97.5 | 99.9 | 94.8 |
Redundancy | 4.8 | 5.9 | 4.5 |
CC(1/2) | 0.991 | 0.998 | 0.913 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293.15 | 25% PEG 3350, 0.2M sodium chloride, 0.1M HEPES pH 7.5 |