6SLJ
Structure of the RagAB peptide transporter
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-15 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 130.597, 142.021, 241.590 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.010 - 3.040 |
R-factor | 0.2254 |
Rwork | 0.222 |
R-free | 0.29520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6sli |
RMSD bond length | 0.010 |
RMSD bond angle | 1.300 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.530 | 3.090 |
High resolution limit [Å] | 3.040 | 3.040 |
Rmeas | 0.430 | 1.551 |
Rpim | 0.157 | 0.558 |
Number of reflections | 87154 | 4279 |
<I/σ(I)> | 3.7 | 1.3 |
Completeness [%] | 100.0 | |
Redundancy | 7.4 | |
CC(1/2) | 0.950 | 0.671 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 4.5 | 293 | 22% PEG400 0.07 M NaCl 0.05 M Na-citrate |