6SGH
Nek2 kinase covalently bound to 2-arylamino-6-ethynylpurine inhibitor 66
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2010-02-10 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9763 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 101.020, 56.280, 74.010 |
Unit cell angles | 90.00, 129.46, 90.00 |
Refinement procedure
Resolution | 57.140 - 3.000 |
R-factor | 0.23 |
Rwork | 0.227 |
R-free | 0.29050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2w5h |
RMSD bond length | 0.003 |
RMSD bond angle | 0.658 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.140 | 3.160 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.132 | 0.430 |
Rpim | 0.104 | 0.336 |
Number of reflections | 6371 | 926 |
<I/σ(I)> | 5.1 | 2.2 |
Completeness [%] | 97.7 | 98.3 |
Redundancy | 2.3 | 2.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | 50 mM Tris pH 8.5, 3% PEG 8000 |