6SFI
Crystal structure of p38 alpha in complex with compound 75 (MCP33)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-26 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 0.92819 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.449, 71.289, 76.200 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 52.060 - 1.600 |
R-factor | 0.1764 |
Rwork | 0.175 |
R-free | 0.20250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lar |
RMSD bond length | 0.016 |
RMSD bond angle | 1.589 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 52.060 | 52.060 | 1.660 |
High resolution limit [Å] | 1.600 | 6.200 | 1.600 |
Rmerge | 0.062 | 0.033 | 0.600 |
Rmeas | 0.073 | 0.036 | 0.700 |
Rpim | 0.027 | 0.014 | 0.259 |
Number of reflections | 50532 | 980 | 4946 |
<I/σ(I)> | 15.6 | ||
Completeness [%] | 99.8 | 98.9 | 99.8 |
Redundancy | 6.8 | 6.3 | 7.1 |
CC(1/2) | 0.999 | 0.999 | 0.794 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 277.15 | 25% MMW PEG smears, 0.1M MES pH 6.2 |