Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6SF4

Apo form of the ribonucleotide reductase NrdB protein from Leeuwenhoekiella blandensis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2016-07-14
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.8500
Spacegroup nameP 21 21 21
Unit cell lengths67.587, 68.196, 148.235
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.900 - 1.700
R-factor0.176
Rwork0.175
R-free0.19300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1syy
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareBUSTER (2.11.7)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.9401.730
High resolution limit [Å]1.7001.700
Rmerge0.1062.299
Rpim0.0350.854
Number of reflections740933025
<I/σ(I)>14.51
Completeness [%]97.576.2
Redundancy17.514.8
CC(1/2)0.9990.538
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7293Protein at 7.5 mg/ml in buffer containing 50 mM Tris-HCl pH 7.8, 300 mM NaCl, 10% glycerol, 20 mM MgCl2 and 2 mM tris(2-carboxyethyl)phosphine (TCEP). Precipitant 2.4 M sodium malonate dibasic monohydrate pH 7.0. Drops 200+200 nl.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon