6SEZ
X-ray structure of the gold/lysozyme adduct formed upon 24h exposure of protein crystals to compound 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-01-14 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 77.844, 77.844, 37.459 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.780 - 2.220 |
R-factor | 0.1787 |
Rwork | 0.174 |
R-free | 0.24880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 193l |
RMSD bond length | 0.009 |
RMSD bond angle | 1.692 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.780 | 2.260 |
High resolution limit [Å] | 2.220 | 2.220 |
Rmerge | 0.133 | 0.639 |
Rpim | 0.064 | 0.037 |
Number of reflections | 6011 | 401 |
<I/σ(I)> | 10.1 | 1.3 |
Completeness [%] | 98.8 | 99.3 |
Redundancy | 5 | 3.5 |
CC(1/2) | 0.722 | 0.916 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 293 | 20% ethylene glycol 0.1 M sodium acetate pH 4.5 0.6 M sodium nitrate |