6S6M
Crystal structure of the human LL37(17-29) antimicrobial peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 41.450, 41.450, 57.470 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.500 - 1.350 |
R-factor | 0.2357 |
Rwork | 0.232 |
R-free | 0.26790 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.613 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.500 | 19.500 | 1.390 |
High resolution limit [Å] | 1.350 | 6.040 | 1.350 |
Rmerge | 0.056 | 0.032 | 0.788 |
Rmeas | 0.060 | 0.037 | 0.839 |
Total number of observations | 59815 | ||
Number of reflections | 6782 | 92 | 505 |
<I/σ(I)> | 21.46 | 35.67 | 3.53 |
Completeness [%] | 98.7 | 86.8 | 99.8 |
Redundancy | 8.82 | 6.065 | 8.851 |
CC(1/2) | 0.997 | 0.997 | 0.897 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Reservoir contained 0.2 M Sodium Acetate, 0.1 M TRIS pH 8.5, 30 %w/v PEG 4K |