6S58
AvaII restriction endonuclease in the absence of nucleic acids
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97625 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 73.231, 102.733, 121.197 |
Unit cell angles | 90.00, 90.67, 90.00 |
Refinement procedure
Resolution | 51.370 - 2.320 |
R-factor | 0.21848 |
Rwork | 0.216 |
R-free | 0.25827 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6g3b |
RMSD bond length | 0.008 |
RMSD bond angle | 1.141 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.300 | 2.430 |
High resolution limit [Å] | 2.350 | 2.350 |
Rmerge | 0.099 | 0.452 |
Rmeas | 0.119 | 0.550 |
Rpim | 0.065 | 0.309 |
Number of reflections | 37373 | 3687 |
<I/σ(I)> | 5.5 | 1.8 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 3.3 | 3.1 |
CC(1/2) | 0.990 | 0.764 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 0.03 M CaCl2, 0.1 M MES/imidazole, pH 6.5, 12.5% v/v MPD, 12.5% w/v PEG 1000, 12.5% w/v PEG 3350 (Morpheus screen A4 condition with MgCl2 eliminated). |